About

Renne Lab

Principal Investigator: Rolf Renne
Henry E. Innes Professor of Cancer Research
University of Florida
UF Health Cancer Center
UF Department of Molecular Genetics and Microbiology
UF Genetics Institute
http://www.rennelab.com

Lead Developer

Changelog

v0.10:
Refinements
Changed verbose task logging to implementation with “beforeScript”
Complete Initial Documentation
Moved macs2 peak-calling out of alpha testing
“Reordered” output step directories
Tuned resource usage defaults
Added process memory usage categories
Move UCSC/Kent tools to external dependency setup
Added bigWig track format creation step
Overhauled alignment modification step
Removed Picard dependency
Changed (non-track) alignment output files to CRAM (compressed BAM)
v0.09:
Refinements
Added one-step database preparation
Implemented ‘list_refs’ mode
Implemented automatic reference paramater finding
Shifted paramaters to config files
Implemented initiate mode
Added minimal documentation
Added Kent’s-Util (faCount) automated installation
Added automated acquisition of Trimmomatic adapters
Implemented MACS2 peak calling
Added autodetection of tag sequence length
v0.08
Initial Github Upload